PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G165100.1.p
Common NameSb07g023810, SORBIDRAFT_07g023810
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 216aa    MW: 23598.4 Da    PI: 6.005
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G165100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.11.2e-377105198
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+k+Cv+apyf +eq +++fa++hk+FGasn +kll +lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ 
  Sobic.007G165100.1.p   7 PCGACKFLRRKCVKGCVFAPYFSHEQgAAHFAAIHKVFGASNASKLLMHLPISDRCEAAVTMSYEAQARLQDPIYGCVAHIFSLQQQVV 95 
                           7*************************89************************************************************* PP

                DUF260  89 qlkaelallk 98 
                           +l+ael++ k
  Sobic.007G165100.1.p  96 SLQAELESFK 105
                           *****99765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.7626108IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-367104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTGLGSPCGA CKFLRRKCVK GCVFAPYFSH EQGAAHFAAI HKVFGASNAS KLLMHLPISD  60
RCEAAVTMSY EAQARLQDPI YGCVAHIFSL QQQVVSLQAE LESFKALATQ GYGDGSLPPN  120
PQKENCERLA PYIQDGQLVF HPTTANNSSV KSERQLYFAN DCFTSASTQH SEGYEQDLCM  180
PDYYNNSNPS CTTQGSGYHD MDDLQSVAFA YLHEA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444564.11e-162hypothetical protein SORBIDRAFT_07g023810
SwissprotQ9M2J72e-66LBD29_ARATH; LOB domain-containing protein 29
TrEMBLC5YMU21e-162C5YMU2_SORBI; Putative uncharacterized protein Sb07g023810
STRINGSb07g023810.11e-161(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-67lateral organ boundaries-domain 29